Resource

Id DNase-seq/ENCSR709IYRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR709IYR [biosample_summary="Homo sapiens suprapubic skin tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR709IYR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0036149/
  • biosample_summary: Homo sapiens suprapubic skin tissue male adult (54 years)
  • date_created: 2019-08-18T16:57:12.463128+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR709IYR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR709IYR float

DNase-seq_ENCSR709IYR

DNase-seq ENCSR709IYR [biosample_summary="Homo sapiens suprapubic skin tissue male adult (54 years)"]
HISTOGRAM FOR DNase-seq_ENCSR709IYR [6, 2.51e+03]
n
1,961,962
mean
77.7
sd
45.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 19619620.06% 13058
chr1 200749 0.08% 1338
chr2 129278 0.05% 862
chr3 116046 0.06% 771
chr4 68657 0.04% 457
chr5 85427 0.05% 570
chr6 99087 0.06% 655
chr7 91449 0.06% 610
chr8 83938 0.06% 559
chr9 75849 0.05% 506
chr10 82347 0.06% 546
chr11 105000 0.08% 699
chr12 105227 0.08% 696
chr13 35092 0.03% 235
chr14 68722 0.06% 456
chr15 61339 0.06% 408
chr16 84956 0.09% 565
chr17 115442 0.14% 771
chr18 27000 0.03% 180
chr19 156000 0.27% 1040
chr20 51856 0.08% 345
chr21 25800 0.06% 169
chr22 39544 0.08% 264
chrX 49857 0.03% 334
chrY 3300 0.01% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13058 37 300 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF752SEF.bed.gz 134.02 KB 6781dfaa8222ea8ee23930cbfee32a35
ENCFF752SEF.tabix.bed.gz 113.56 KB 6f3d6f14a3182c566ce5ae64942849e1
ENCFF752SEF.tabix.bed.gz.tbi 91.38 KB 968f6c2425bee7cf3c9d0cbec391bb48
genomic_resource.yaml 2.2 KB 88464487ff486be6c428ea1f9ca50ef4
statistics/