DNase-seq_ENCSR709IYR
DNase-seq ENCSR709IYR [biosample_summary="Homo sapiens suprapubic skin tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR709IYR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR709IYR [biosample_summary="Homo sapiens suprapubic skin tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN676PEN|/analyses/ENCAN676PEN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF842PJM|/files/ENCFF842PJM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR709IYR | float |
DNase-seq_ENCSR709IYR |
DNase-seq ENCSR709IYR [biosample_summary="Homo sapiens suprapubic skin tissue male adult (54 years)"]
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[6, 2.51e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF752SEF.bed.gz | 134.02 KB | 6781dfaa8222ea8ee23930cbfee32a35 |
| ENCFF752SEF.bed.gz.dvc | 100.0 B | d1010f7c7ed67f410b9103baf9636d6f |
| ENCFF752SEF.tabix.bed.gz | 113.56 KB | 6f3d6f14a3182c566ce5ae64942849e1 |
| ENCFF752SEF.tabix.bed.gz.dvc | 106.0 B | 9491be7f750767ec8a95d8c5531b79cb |
| ENCFF752SEF.tabix.bed.gz.tbi | 91.38 KB | 968f6c2425bee7cf3c9d0cbec391bb48 |
| ENCFF752SEF.tabix.bed.gz.tbi.dvc | 109.0 B | aaf056edce5196c984d0ad2bf91cd906 |
| genomic_resource.yaml | 2.2 KB | 88464487ff486be6c428ea1f9ca50ef4 |
| genomic_resource_original.yaml | 2.1 KB | aff3eb1bb58a48ef42b8de03b0864c52 |
| statistics/ |