DNase-seq_ENCSR706IDL
DNase-seq ENCSR706IDL [biosample_summary="Homo sapiens midbrain tissue male adult (78 years) and male adult (84 years)"]
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| Id: | DNase-seq/ENCSR706IDL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR706IDL [biosample_summary="Homo sapiens midbrain tissue male adult (78 years) and male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (84 years) male adult (78 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF860SCX|/files/ENCFF860SCX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.18. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF591KQX|/files/ENCFF591KQX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR706IDL | float |
DNase-seq_ENCSR706IDL |
DNase-seq ENCSR706IDL [biosample_summary="Homo sapiens midbrain tissue male adult (78 years) and male adult (84 years)"]
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[0.0093, 7.72] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF740RSJ.bed.gz | 2.06 MB | 498ef60ae5dc2c273fe8c9b27cbac660 |
| ENCFF740RSJ.bed.gz.dvc | 101.0 B | a2d0b4a3df338a7c94e3b5a876498b4d |
| ENCFF740RSJ.tabix.bed.gz | 1.97 MB | a73ae15051ebf4ebf8e7eba596cee3da |
| ENCFF740RSJ.tabix.bed.gz.dvc | 107.0 B | 5033f49201d2aa90b3a51a57e4900e98 |
| ENCFF740RSJ.tabix.bed.gz.tbi | 482.11 KB | 59b01ecac88bbe15ba4ffa00e1b45f2a |
| ENCFF740RSJ.tabix.bed.gz.tbi.dvc | 110.0 B | 96e9dbed91e8e00c53d2d21c6169575e |
| genomic_resource.yaml | 2.96 KB | 7ceba08ef182310def7556599f9cb158 |
| genomic_resource_original.yaml | 2.84 KB | 928ab51bcb6bcd1782ea8f6e7a212c12 |
| statistics/ |