Resource
| Id | DNase-seq/ENCSR705CNJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR705CNJ [biosample_summary="Homo sapiens heart tissue male embryo (72 days) and male embryo (76 days)"] |
| Description |
status: released biological_replicates: Rep 2 summary: male embryo (72 days) male embryo (76 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984ZHE|/files/ENCFF984ZHE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR705CNJ | float |
DNase-seq_ENCSR705CNJ |
DNase-seq ENCSR705CNJ [biosample_summary="Homo sapiens heart tissue male embryo (72 days) and male embryo (76 days)"]
|
 |
[0.0254, 19.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51212534 | 1.59% | 240254 |
| chr1 | 4662514 | 1.87% | 21646 |
| chr2 | 4192685 | 1.73% | 19834 |
| chr3 | 3451808 | 1.74% | 16213 |
| chr4 | 2832936 | 1.49% | 13203 |
| chr5 | 3019088 | 1.66% | 14167 |
| chr6 | 3190091 | 1.87% | 14683 |
| chr7 | 2692714 | 1.69% | 12688 |
| chr8 | 2444250 | 1.68% | 11485 |
| chr9 | 2157999 | 1.56% | 10100 |
| chr10 | 2650656 | 1.98% | 12305 |
| chr11 | 2551409 | 1.89% | 12066 |
| chr12 | 2483458 | 1.86% | 11573 |
| chr13 | 1506303 | 1.32% | 7102 |
| chr14 | 1509865 | 1.41% | 7109 |
| chr15 | 1718171 | 1.68% | 8021 |
| chr16 | 1448266 | 1.60% | 6909 |
| chr17 | 1951820 | 2.34% | 9159 |
| chr18 | 1281101 | 1.59% | 5979 |
| chr19 | 1355483 | 2.31% | 6309 |
| chr20 | 1240100 | 1.92% | 5903 |
| chr21 | 581293 | 1.24% | 2745 |
| chr22 | 849283 | 1.67% | 4029 |
| chrX | 1389232 | 0.89% | 6758 |
| chrY | 52009 | 0.09% | 268 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 240254 | 1 | 1480 | 213.16 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF579OZM.bed.gz | 2.55 MB | de956f781f3ec231051627f474982ed9 |
| ENCFF579OZM.tabix.bed.gz | 2.35 MB | ab4bbb513a2aec34bd482439bb99fc50 |
| ENCFF579OZM.tabix.bed.gz.tbi | 698.21 KB | 4637a2c30009eae707e59b994f1b03d2 |
| genomic_resource.yaml | 2.13 KB | 7818f2329a21c0c845385809a053200e |
| statistics/ |