DNase-seq_ENCSR705CNJ
DNase-seq ENCSR705CNJ [biosample_summary="Homo sapiens heart tissue male embryo (72 days) and male embryo (76 days)"]
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| Id: | DNase-seq/ENCSR705CNJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR705CNJ [biosample_summary="Homo sapiens heart tissue male embryo (72 days) and male embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male embryo (72 days) male embryo (76 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984ZHE|/files/ENCFF984ZHE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR705CNJ | float |
DNase-seq_ENCSR705CNJ |
DNase-seq ENCSR705CNJ [biosample_summary="Homo sapiens heart tissue male embryo (72 days) and male embryo (76 days)"]
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[0.0254, 19.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF579OZM.bed.gz | 2.55 MB | de956f781f3ec231051627f474982ed9 |
| ENCFF579OZM.bed.gz.dvc | 101.0 B | dea1d38784e5bdce569ec0d1cb851bb8 |
| ENCFF579OZM.tabix.bed.gz | 2.35 MB | ab4bbb513a2aec34bd482439bb99fc50 |
| ENCFF579OZM.tabix.bed.gz.dvc | 107.0 B | 80caed85957f1e124e79564bc575e3f9 |
| ENCFF579OZM.tabix.bed.gz.tbi | 698.21 KB | 4637a2c30009eae707e59b994f1b03d2 |
| ENCFF579OZM.tabix.bed.gz.tbi.dvc | 110.0 B | 8fe557d80f25dc4ad12ea0d1859d7a33 |
| genomic_resource.yaml | 2.13 KB | 7818f2329a21c0c845385809a053200e |
| genomic_resource_original.yaml | 2.02 KB | c038299552f0f44a8b76cd0dc845e311 |
| statistics/ |