Resource

Id DNase-seq/ENCSR703VGIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR703VGI [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"]
Description
Labels
  • accession: ENCSR703VGI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)
  • date_created: 2021-08-31T15:47:27.335128+00:00
  • date_released: 2021-09-10
  • doi: 10.17989/ENCSR703VGI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR703VGI float

DNase-seq_ENCSR703VGI
DNase-seq ENCSR703VGI [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR703VGI [0.0918, 77.4]
n
10,335,403
mean
5.64
sd
8.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103354030.32% 55461
chr1 1025132 0.41% 5490
chr2 743997 0.31% 4032
chr3 558663 0.28% 3001
chr4 372200 0.20% 2017
chr5 462365 0.25% 2468
chr6 621850 0.36% 3326
chr7 484853 0.30% 2648
chr8 376945 0.26% 2029
chr9 402382 0.29% 2179
chr10 451821 0.34% 2431
chr11 535388 0.40% 2874
chr12 529115 0.40% 2836
chr13 225102 0.20% 1192
chr14 370630 0.35% 2007
chr15 329658 0.32% 1788
chr16 404055 0.45% 2177
chr17 620497 0.75% 3282
chr18 164035 0.20% 897
chr19 659920 1.13% 3404
chr20 284574 0.44% 1545
chr21 128600 0.28% 687
chr22 242058 0.48% 1325
chrX 328660 0.21% 1756
chrY 12903 0.02% 70
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55461 5 880 186.35 180
global segment-length histogram

Files

Filename Size md5
ENCFF846MQW.bed.gz 627.68 KB 08bfcd4629410223552b8f7c9704a7f7
ENCFF846MQW.tabix.bed.gz 574.06 KB b032bd1a6a2d5923a58495d7edad6ffc
ENCFF846MQW.tabix.bed.gz.tbi 250.38 KB 7a94ba2f1558acb242e1e42a6f205f60
genomic_resource.yaml 1.32 KB 3d42dedf4d9cd8f3fdfd4452c64d21f7
statistics/