Resource
| Id | DNase-seq/ENCSR702DPD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR702DPD [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF231SIZ|/files/ENCFF231SIZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR702DPD | float |
DNase-seq_ENCSR702DPD |
DNase-seq ENCSR702DPD [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)"]
|
 |
[0.0539, 15.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23356991 | 0.73% | 121579 |
| chr1 | 2075256 | 0.83% | 10866 |
| chr2 | 2040980 | 0.84% | 10585 |
| chr3 | 1219256 | 0.61% | 6380 |
| chr4 | 663800 | 0.35% | 3499 |
| chr5 | 1114531 | 0.61% | 5814 |
| chr6 | 886344 | 0.52% | 4741 |
| chr7 | 1203906 | 0.76% | 6313 |
| chr8 | 967123 | 0.67% | 5000 |
| chr9 | 1098100 | 0.79% | 5709 |
| chr10 | 1377039 | 1.03% | 7188 |
| chr11 | 1253050 | 0.93% | 6363 |
| chr12 | 955725 | 0.72% | 5025 |
| chr13 | 438903 | 0.38% | 2297 |
| chr14 | 845584 | 0.79% | 4376 |
| chr15 | 958594 | 0.94% | 4963 |
| chr16 | 878431 | 0.97% | 4602 |
| chr17 | 1332973 | 1.60% | 6954 |
| chr18 | 501848 | 0.62% | 2611 |
| chr19 | 973129 | 1.66% | 4967 |
| chr20 | 784433 | 1.22% | 4126 |
| chr21 | 451569 | 0.97% | 2280 |
| chr22 | 871609 | 1.72% | 4467 |
| chrX | 464165 | 0.30% | 2447 |
| chrY | 643 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121579 | 1 | 1080 | 192.11 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF293PAS.bed.gz | 1.2 MB | d19f6564e6214618057d9dbb3d3a7b74 |
| ENCFF293PAS.tabix.bed.gz | 1.12 MB | cdaf6c7a8f0919fe20011bdaf0b4a982 |
| ENCFF293PAS.tabix.bed.gz.tbi | 256.2 KB | 67ab249dd1b45104318cd294ba3ab97d |
| genomic_resource.yaml | 2.08 KB | ad1f7e15909b61b6adcdbb61893de007 |
| statistics/ |