DNase-seq_ENCSR702DPD
DNase-seq ENCSR702DPD [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR702DPD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR702DPD [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF231SIZ|/files/ENCFF231SIZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR702DPD | float |
DNase-seq_ENCSR702DPD |
DNase-seq ENCSR702DPD [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)"]
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[0.0539, 15.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF293PAS.bed.gz | 1.2 MB | d19f6564e6214618057d9dbb3d3a7b74 |
| ENCFF293PAS.bed.gz.dvc | 101.0 B | e2044a9824d5d704d7ee84b245dd5b95 |
| ENCFF293PAS.tabix.bed.gz | 1.12 MB | cdaf6c7a8f0919fe20011bdaf0b4a982 |
| ENCFF293PAS.tabix.bed.gz.dvc | 107.0 B | a102a791e554db2c52f4997fb2abf13f |
| ENCFF293PAS.tabix.bed.gz.tbi | 256.2 KB | 67ab249dd1b45104318cd294ba3ab97d |
| ENCFF293PAS.tabix.bed.gz.tbi.dvc | 110.0 B | 2725f2225ca6bd20863030bc2c89b82c |
| genomic_resource.yaml | 2.08 KB | ad1f7e15909b61b6adcdbb61893de007 |
| genomic_resource_original.yaml | 1.97 KB | 125aaefe8db9a1c41db629ecf7905615 |
| statistics/ |