DNase-seq_ENCSR698CUE
DNase-seq ENCSR698CUE [biosample_summary="Homo sapiens muscle of back tissue male embryo (96 days)"]
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| Id: | DNase-seq/ENCSR698CUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR698CUE [biosample_summary="Homo sapiens muscle of back tissue male embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (96 days) output_type: peaks audit_warning: Alignment file {ENCFF794PDW|/files/ENCFF794PDW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 25598938 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF794PDW|/files/ENCFF794PDW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR698CUE | float |
DNase-seq_ENCSR698CUE |
DNase-seq ENCSR698CUE [biosample_summary="Homo sapiens muscle of back tissue male embryo (96 days)"]
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[0.196, 12.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF426GNY.bed.gz | 389.88 KB | 1e5fcc2ee908772bf420c685b5375859 |
| ENCFF426GNY.bed.gz.dvc | 100.0 B | 4fceb4cf605e110892c099ccf392ca3a |
| ENCFF426GNY.tabix.bed.gz | 348.61 KB | 77b673e120c68762656414662087486b |
| ENCFF426GNY.tabix.bed.gz.dvc | 106.0 B | f9d54f6e94916d110cae3d8ea180b1bb |
| ENCFF426GNY.tabix.bed.gz.tbi | 221.55 KB | 2df175a0e5df745761435240cef7c83c |
| ENCFF426GNY.tabix.bed.gz.tbi.dvc | 110.0 B | 2e14692376bf40202848d6d437316b1a |
| genomic_resource.yaml | 2.66 KB | 1fdfae8d87ca034248cc720354ee3b16 |
| genomic_resource_original.yaml | 2.56 KB | 55533ee27f25955ca1634ca61887beae |
| statistics/ |