Resource

Id DNase-seq/ENCSR696LPCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR696LPC [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR696LPC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2020-04-20T23:46:08.690458+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR696LPC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR696LPC float

DNase-seq_ENCSR696LPC
DNase-seq ENCSR696LPC [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR696LPC [0.0491, 61.7]
n
11,562,046
mean
4.57
sd
6.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 115620460.36% 61097
chr1 1192440 0.48% 6278
chr2 812042 0.34% 4297
chr3 630145 0.32% 3310
chr4 394409 0.21% 2076
chr5 499349 0.28% 2650
chr6 702210 0.41% 3670
chr7 507961 0.32% 2712
chr8 430658 0.30% 2284
chr9 450873 0.33% 2412
chr10 523112 0.39% 2766
chr11 580658 0.43% 3075
chr12 606272 0.45% 3190
chr13 237957 0.21% 1267
chr14 407188 0.38% 2149
chr15 384910 0.38% 2067
chr16 466462 0.52% 2464
chr17 713412 0.86% 3733
chr18 182477 0.23% 971
chr19 727869 1.24% 3766
chr20 313480 0.49% 1680
chr21 144985 0.31% 783
chr22 287624 0.57% 1532
chrX 351666 0.23% 1895
chrY 13887 0.02% 70
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61097 1 980 189.24 180
global segment-length histogram

Files

Filename Size md5
ENCFF415KTM.bed.gz 686.15 KB d9a59af1b3d29a1bddd2d8e1c9eee70b
ENCFF415KTM.tabix.bed.gz 628.98 KB a9ef38592cf389a0c84ae00ed1cdae3f
ENCFF415KTM.tabix.bed.gz.tbi 249.34 KB 96cc89fcdcc342c57add5954a4e2f87b
genomic_resource.yaml 1.6 KB 9d6c1a5e708afcc56dad78712e834817
statistics/