| Id: | DNase-seq/ENCSR692PKU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR692PKU [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF996PZC|/files/ENCFF996PZC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR692PKU | float |
DNase-seq_ENCSR692PKU |
DNase-seq ENCSR692PKU [biosample_summary="Homo sapiens activated effector memory CD4-positive, alpha-beta T cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.0527, 30] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211UBZ.bed.gz | 607.31 KB | b6c806d80398f630f46041bc48ec7343 |
| ENCFF211UBZ.bed.gz.dvc | 100.0 B | 77e9b1992de6f6fadab8d8317a6c4a66 |
| ENCFF211UBZ.tabix.bed.gz | 557.83 KB | 8a58a7d09ede76c3b1c3387ed56911ff |
| ENCFF211UBZ.tabix.bed.gz.dvc | 106.0 B | 98285f4b9e4925580f24f5af41a49f10 |
| ENCFF211UBZ.tabix.bed.gz.tbi | 240.78 KB | ab7b98f673c6daf8a057b720b72da928 |
| ENCFF211UBZ.tabix.bed.gz.tbi.dvc | 110.0 B | 66e396433c172be9b59aae5946dd3ada |
| genomic_resource.yaml | 2.62 KB | 690972a31695f7cf6cefc3cf58bf196d |
| genomic_resource_original.yaml | 2.44 KB | 8bc3f1cbedfa3cbcf066eced6d47f425 |
| statistics/ |