DNase-seq_ENCSR690CVL
DNase-seq ENCSR690CVL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR690CVL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR690CVL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF002OZQ|/files/ENCFF002OZQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR690CVL | float |
DNase-seq_ENCSR690CVL |
DNase-seq ENCSR690CVL [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0303, 85.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF030QSS.bed.gz | 4.16 MB | 811eff125172217574f318cb8c0a2c1f |
| ENCFF030QSS.bed.gz.dvc | 101.0 B | 647a278dea90047da44d7a7918e922d0 |
| ENCFF030QSS.tabix.bed.gz | 3.88 MB | 4ec1500283a4310713f4fab52ed7b7f8 |
| ENCFF030QSS.tabix.bed.gz.dvc | 107.0 B | 08694da9a4c6366dfedfbc2d84820c11 |
| ENCFF030QSS.tabix.bed.gz.tbi | 466.55 KB | 175b70c7951e117c8d445c25167e64fb |
| ENCFF030QSS.tabix.bed.gz.tbi.dvc | 110.0 B | 2880a8c514812b01470909b403923438 |
| genomic_resource.yaml | 2.25 KB | 897faa3f83a62219d3768e2bcf76a39d |
| genomic_resource_original.yaml | 2.1 KB | f04f91a4e68464dda6309df8bdf9f53e |
| statistics/ |