Resource

Id DNase-seq/ENCSR689FYAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR689FYA [biosample_summary="Homo sapiens placenta tissue male embryo"]
Description
Labels
  • accession: ENCSR689FYA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2019-08-02T16:57:25.444759+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR689FYA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR689FYA float

DNase-seq_ENCSR689FYA

DNase-seq ENCSR689FYA [biosample_summary="Homo sapiens placenta tissue male embryo"]
HISTOGRAM FOR DNase-seq_ENCSR689FYA [0.0276, 50.8]
n
29,309,533
mean
2.38
sd
3.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 293095330.91% 155943
chr1 2815368 1.13% 14968
chr2 2210303 0.91% 11966
chr3 1685806 0.85% 9158
chr4 1103232 0.58% 6122
chr5 1394258 0.77% 7626
chr6 1554323 0.91% 8507
chr7 1503763 0.94% 8023
chr8 1264903 0.87% 6753
chr9 1364809 0.99% 7286
chr10 1349816 1.01% 7246
chr11 1663396 1.23% 8642
chr12 1236658 0.93% 6685
chr13 585393 0.51% 3189
chr14 1049722 0.98% 5475
chr15 1047324 1.03% 5499
chr16 1098771 1.22% 5682
chr17 1484928 1.78% 7530
chr18 515612 0.64% 2842
chr19 1508177 2.57% 7524
chr20 840235 1.30% 4478
chr21 394003 0.84% 2035
chr22 770197 1.52% 3912
chrX 806882 0.52% 4428
chrY 61654 0.11% 367
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 155943 1 1060 187.95 180
global segment-length histogram

Files

Filename Size md5
ENCFF215WSI.bed.gz 1.69 MB 6b8b04b55e18cd80176e2918668665ed
ENCFF215WSI.tabix.bed.gz 1.55 MB 42580dab121479120731eefcfa99a27b
ENCFF215WSI.tabix.bed.gz.tbi 453.21 KB 7e6bb19ed07fdf74af5985f7b3ffbece
genomic_resource.yaml 1.16 KB 1d09d2cbe10ae1118ef88992598747c6
statistics/