Resource

Id DNase-seq/ENCSR688OIJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR688OIJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR688OIJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-19T18:36:47.984037+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR688OIJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR688OIJ float

DNase-seq_ENCSR688OIJ
DNase-seq ENCSR688OIJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR688OIJ [0.262, 65.6]
n
7,744,348
mean
7.13
sd
6.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77443480.24% 42562
chr1 773882 0.31% 4237
chr2 540671 0.22% 2970
chr3 432263 0.22% 2360
chr4 271723 0.14% 1461
chr5 347538 0.19% 1918
chr6 449358 0.26% 2459
chr7 353005 0.22% 1939
chr8 287384 0.20% 1618
chr9 319429 0.23% 1764
chr10 342169 0.26% 1902
chr11 395678 0.29% 2174
chr12 400931 0.30% 2198
chr13 154657 0.14% 835
chr14 269563 0.25% 1483
chr15 259773 0.25% 1447
chr16 327360 0.36% 1809
chr17 458056 0.55% 2528
chr18 121053 0.15% 670
chr19 531272 0.91% 2823
chr20 220160 0.34% 1244
chr21 86927 0.19% 482
chr22 191439 0.38% 1067
chrX 210057 0.13% 1174
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42562 9 740 181.95 180
global segment-length histogram

Files

Filename Size md5
ENCFF623VXL.bed.gz 462.16 KB 2e9fa902a6048118c925b45159c0809f
ENCFF623VXL.tabix.bed.gz 416.31 KB 4137982ea7dcb5ee9a57daf7e96e1141
ENCFF623VXL.tabix.bed.gz.tbi 218.28 KB e25eb2ff6e5582bb974f4231576510c6
genomic_resource.yaml 2.47 KB d1036c8d033a456fb410c70a6b345e49
statistics/