| Id: | DNase-seq/ENCSR688OIJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR688OIJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF404XYC|/files/ENCFF404XYC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22917066 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR688OIJ | float |
DNase-seq_ENCSR688OIJ |
DNase-seq ENCSR688OIJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
|
 |
[0.262, 65.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF623VXL.bed.gz | 462.16 KB | 2e9fa902a6048118c925b45159c0809f |
| ENCFF623VXL.bed.gz.dvc | 100.0 B | feca1bc6580ceabc4b000e2b42e36644 |
| ENCFF623VXL.tabix.bed.gz | 416.31 KB | 4137982ea7dcb5ee9a57daf7e96e1141 |
| ENCFF623VXL.tabix.bed.gz.dvc | 106.0 B | 963e6dfefa0d5193cb88ca181b1bb970 |
| ENCFF623VXL.tabix.bed.gz.tbi | 218.28 KB | e25eb2ff6e5582bb974f4231576510c6 |
| ENCFF623VXL.tabix.bed.gz.tbi.dvc | 110.0 B | 0fcd16775caa66f169541112df66c585 |
| genomic_resource.yaml | 2.47 KB | d1036c8d033a456fb410c70a6b345e49 |
| genomic_resource_original.yaml | 2.24 KB | d8cb5f34d5a972cea5d3ff469b729b80 |
| statistics/ |