Resource

Id DNase-seq/ENCSR688DKYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR688DKY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
Description
Labels
  • accession: ENCSR688DKY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • date_created: 2020-04-20T23:45:33.868382+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR688DKY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR688DKY float

DNase-seq_ENCSR688DKY
DNase-seq ENCSR688DKY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR688DKY [0.462, 52.4]
n
6,283,026
mean
7.46
sd
7.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 62830260.20% 34535
chr1 641952 0.26% 3502
chr2 431164 0.18% 2382
chr3 341782 0.17% 1896
chr4 211930 0.11% 1167
chr5 272461 0.15% 1512
chr6 351599 0.21% 1946
chr7 293514 0.18% 1610
chr8 231690 0.16% 1296
chr9 256457 0.19% 1410
chr10 266953 0.20% 1486
chr11 322148 0.24% 1771
chr12 325933 0.24% 1786
chr13 125781 0.11% 684
chr14 214062 0.20% 1179
chr15 202083 0.20% 1122
chr16 268293 0.30% 1465
chr17 394082 0.47% 2160
chr18 94411 0.12% 535
chr19 463365 0.79% 2439
chr20 177244 0.28% 1002
chr21 69520 0.15% 388
chr22 154129 0.30% 848
chrX 166213 0.11% 916
chrY 6260 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34535 6 740 181.93 180
global segment-length histogram

Files

Filename Size md5
ENCFF090KMY.bed.gz 379.51 KB 7d49b7ac7eb7ef79ac3dc905b7d2ce70
ENCFF090KMY.tabix.bed.gz 342.71 KB dbd80692dfd96bf639c51b5c36b4d2b9
ENCFF090KMY.tabix.bed.gz.tbi 189.74 KB d6b06a60ce35f826f2ad37ddaea4aa09
genomic_resource.yaml 2.44 KB c05de53e2f234b338cb7cca0ca6ab007
statistics/