| Id: | DNase-seq/ENCSR688DKY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR688DKY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF860JAT|/files/ENCFF860JAT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26014774 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR688DKY | float |
DNase-seq_ENCSR688DKY |
DNase-seq ENCSR688DKY [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
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[0.462, 52.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF090KMY.bed.gz | 379.51 KB | 7d49b7ac7eb7ef79ac3dc905b7d2ce70 |
| ENCFF090KMY.bed.gz.dvc | 100.0 B | 7b792d307341b24e4b34851f93ac8263 |
| ENCFF090KMY.tabix.bed.gz | 342.71 KB | dbd80692dfd96bf639c51b5c36b4d2b9 |
| ENCFF090KMY.tabix.bed.gz.dvc | 106.0 B | 53f59cac095628795cfe0a094aa4900d |
| ENCFF090KMY.tabix.bed.gz.tbi | 189.74 KB | d6b06a60ce35f826f2ad37ddaea4aa09 |
| ENCFF090KMY.tabix.bed.gz.tbi.dvc | 110.0 B | a6c8a783748e38328935ed89e14f14fc |
| genomic_resource.yaml | 2.44 KB | c05de53e2f234b338cb7cca0ca6ab007 |
| genomic_resource_original.yaml | 2.21 KB | 59d969e2dcfa95b33bc5f076c9362b83 |
| statistics/ |