Resource

Id DNase-seq/ENCSR686WJLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR686WJL [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR686WJL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue female adult (53 years)
  • date_created: 2019-08-18T16:57:11.994823+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR686WJL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR686WJL float

DNase-seq_ENCSR686WJL
DNase-seq ENCSR686WJL [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR686WJL [7, 1.28e+04]
n
7,539,974
mean
175
sd
193

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75399740.23% 50231
chr1 766477 0.31% 5109
chr2 592554 0.24% 3951
chr3 472366 0.24% 3148
chr4 296021 0.16% 1972
chr5 370107 0.20% 2466
chr6 433828 0.25% 2889
chr7 358819 0.23% 2388
chr8 315992 0.22% 2102
chr9 324704 0.23% 2162
chr10 374426 0.28% 2494
chr11 383708 0.28% 2556
chr12 368283 0.28% 2454
chr13 170172 0.15% 1135
chr14 234970 0.22% 1566
chr15 261905 0.26% 1745
chr16 298910 0.33% 1993
chr17 393523 0.47% 2622
chr18 126300 0.16% 842
chr19 342280 0.58% 2278
chr20 204300 0.32% 1359
chr21 89242 0.19% 595
chr22 164175 0.32% 1094
chrX 193912 0.12% 1291
chrY 3000 0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50231 31 300 150.11 150
global segment-length histogram

Files

Filename Size md5
ENCFF032ZRJ.bed.gz 514.04 KB 5b638c55de578008820d61016cd8634a
ENCFF032ZRJ.tabix.bed.gz 436.99 KB 962efa0f17f7ebfc449c624a1797ea7f
ENCFF032ZRJ.tabix.bed.gz.tbi 251.29 KB 8a9c9794ac8bf7acafda73c93c3e2361
genomic_resource.yaml 1.44 KB ccecdd9c42a2eba65010e3f2d06ddce1
statistics/