Resource

Id DNase-seq/ENCSR686LOEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR686LOE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (89 years)"]
Description
Labels
  • accession: ENCSR686LOE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2020-05-28T00:56:21.884388+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR686LOE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR686LOE float

DNase-seq_ENCSR686LOE
DNase-seq ENCSR686LOE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (89 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR686LOE [0.0609, 23.3]
n
17,130,288
mean
1.76
sd
2.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 171302880.53% 89359
chr1 1477740 0.59% 7749
chr2 1439695 0.59% 7504
chr3 885815 0.45% 4654
chr4 613364 0.32% 3161
chr5 834379 0.46% 4376
chr6 754019 0.44% 3979
chr7 831512 0.52% 4397
chr8 735340 0.51% 3816
chr9 794178 0.57% 4161
chr10 958441 0.72% 4956
chr11 1018332 0.75% 5311
chr12 712945 0.53% 3731
chr13 347519 0.30% 1788
chr14 570790 0.53% 3011
chr15 612219 0.60% 3213
chr16 660646 0.73% 3417
chr17 928838 1.12% 4853
chr18 309494 0.39% 1605
chr19 780810 1.33% 3929
chr20 536638 0.83% 2794
chr21 299246 0.64% 1589
chr22 649271 1.28% 3360
chrX 377938 0.24% 1995
chrY 1119 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89359 1 900 191.7 180
global segment-length histogram

Files

Filename Size md5
ENCFF853PIR.bed.gz 956.44 KB 3765848bfbb97f6fa01d57371fc5d6bb
ENCFF853PIR.tabix.bed.gz 874.36 KB eee2acbb6ae1662c9fcc015ccbceb1a3
ENCFF853PIR.tabix.bed.gz.tbi 295.39 KB 402d38bb0085f2e48ea8f909516f4715
genomic_resource.yaml 1.28 KB 692145aafe93b2e28f7de9f04ab89fd1
statistics/