Resource

Id DNase-seq/ENCSR685PCScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR685PCS [biosample_summary="Homo sapiens placenta tissue male embryo"]
Description
Labels
  • accession: ENCSR685PCS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2019-08-02T16:57:25.945718+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR685PCS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR685PCS float

DNase-seq_ENCSR685PCS

DNase-seq ENCSR685PCS [biosample_summary="Homo sapiens placenta tissue male embryo"]
HISTOGRAM FOR DNase-seq_ENCSR685PCS [0.022, 49.5]
n
66,375,696
mean
0.872
sd
2.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 663756962.06% 337828
chr1 6604897 2.65% 33388
chr2 5185859 2.14% 26394
chr3 3200660 1.61% 16693
chr4 2049576 1.08% 10563
chr5 2836049 1.56% 14707
chr6 2656965 1.56% 14116
chr7 3692689 2.32% 18857
chr8 2559856 1.76% 13023
chr9 3035729 2.19% 15321
chr10 3534507 2.64% 17956
chr11 3966690 2.94% 19547
chr12 2682831 2.01% 14032
chr13 1025815 0.90% 5471
chr14 2273306 2.12% 11489
chr15 2449173 2.40% 12622
chr16 3271980 3.62% 16615
chr17 4139160 4.97% 20648
chr18 993963 1.24% 5274
chr19 2738256 4.67% 13732
chr20 2590614 4.02% 13006
chr21 1171585 2.51% 5754
chr22 2645284 5.21% 12707
chrX 1019842 0.65% 5597
chrY 50410 0.09% 316
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 337828 1 1120 196.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF340FJC.bed.gz 3.32 MB a3b7f064eb403c68b49d06d4da788691
ENCFF340FJC.tabix.bed.gz 3.1 MB 2e71fcc9d9565715cbad16c67315264d
ENCFF340FJC.tabix.bed.gz.tbi 428.98 KB 8f8def719be349d48c4daa72ba7cb7a9
genomic_resource.yaml 1.16 KB cb66d1f2b72aab77e367cc538c216801
statistics/