DNase-seq_ENCSR683YLO
DNase-seq ENCSR683YLO [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
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| Id: | DNase-seq/ENCSR683YLO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR683YLO [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN790XTS|/analyses/ENCAN790XTS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF244EYZ|/files/ENCFF244EYZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR683YLO | float |
DNase-seq_ENCSR683YLO |
DNase-seq ENCSR683YLO [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
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[4, 2.48e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF227HYU.bed.gz | 1.07 MB | aa0417274d25fbfc7702694541c4c4c5 |
| ENCFF227HYU.bed.gz.dvc | 101.0 B | ec4f694912cdaeba2207c4d439cba67c |
| ENCFF227HYU.tabix.bed.gz | 942.94 KB | 24a2c5f28f97898148063152024508c5 |
| ENCFF227HYU.tabix.bed.gz.dvc | 106.0 B | 89f07b130aa72fe0ee2abc844f3fe02e |
| ENCFF227HYU.tabix.bed.gz.tbi | 481.16 KB | e352beaaeff221150b25f3b1e3c96305 |
| ENCFF227HYU.tabix.bed.gz.tbi.dvc | 110.0 B | fd2fee2e76368ee8f9a7c2cbe4856a43 |
| genomic_resource.yaml | 2.19 KB | 3fdf38f5285e6ae6830f0ff4d5477357 |
| genomic_resource_original.yaml | 2.09 KB | cbaca307e4af4b0a37516f2902f97135 |
| statistics/ |