DNase-seq_ENCSR682ZZT
DNase-seq ENCSR682ZZT [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (83 years)"]
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| Id: | DNase-seq/ENCSR682ZZT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR682ZZT [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF076BCM|/files/ENCFF076BCM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR682ZZT | float |
DNase-seq_ENCSR682ZZT |
DNase-seq ENCSR682ZZT [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (83 years)"]
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[0.0645, 24.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF661CDH.bed.gz | 1.23 MB | 4edb9c813813ad61d5ae2d6f6f946ed9 |
| ENCFF661CDH.bed.gz.dvc | 101.0 B | 9def04a78b8ca87289eea1496235fe42 |
| ENCFF661CDH.tabix.bed.gz | 1.12 MB | b83c4bfcff17288b113505216ead2062 |
| ENCFF661CDH.tabix.bed.gz.dvc | 107.0 B | fd179e1f3c56f5120c552f46d77549d1 |
| ENCFF661CDH.tabix.bed.gz.tbi | 476.68 KB | faff7caea4cb42b6a02ee49937e38cc9 |
| ENCFF661CDH.tabix.bed.gz.tbi.dvc | 110.0 B | 2a5b416164509dc7e64668a957ab408e |
| genomic_resource.yaml | 2.07 KB | 4f0f45a5782d50187d77ed5e8e2abb45 |
| genomic_resource_original.yaml | 1.96 KB | f0612f8187c123f837eb097528e953c7 |
| statistics/ |