Resource

Id DNase-seq/ENCSR680SDScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR680SDS [biosample_summary="Homo sapiens left lung tissue female embryo (107 days)"]
Description
Labels
  • accession: ENCSR680SDS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue female embryo (107 days)
  • date_created: 2015-09-16T21:42:54.951283+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR680SDS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (107 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR680SDS float

DNase-seq_ENCSR680SDS
DNase-seq ENCSR680SDS [biosample_summary="Homo sapiens left lung tissue female embryo (107 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR680SDS [3, 1.05e+03]
n
19,049,983
mean
73.6
sd
87.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 190499830.59% 126544
chr1 1681820 0.68% 11170
chr2 1565700 0.65% 10400
chr3 1270248 0.64% 8430
chr4 1033391 0.54% 6867
chr5 1095167 0.60% 7275
chr6 1187980 0.70% 7899
chr7 984435 0.62% 6541
chr8 906092 0.62% 6014
chr9 802334 0.58% 5329
chr10 963571 0.72% 6403
chr11 956830 0.71% 6357
chr12 925508 0.69% 6143
chr13 570191 0.50% 3782
chr14 596049 0.56% 3965
chr15 614341 0.60% 4083
chr16 565898 0.63% 3760
chr17 755872 0.91% 5022
chr18 462730 0.58% 3076
chr19 567484 0.97% 3774
chr20 451048 0.70% 3000
chr21 219310 0.47% 1458
chr22 301611 0.59% 2003
chrX 570723 0.37% 3782
chrY 1650 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126544 1 450 150.54 150
global segment-length histogram

Files

Filename Size md5
ENCFF671CWO.bed.gz 1.2 MB 1f44aecd2f7ff4c3777f68e4d96cdd0f
ENCFF671CWO.tabix.bed.gz 1.03 MB 043fc6e6838b69728c681ceebdd6a6bf
ENCFF671CWO.tabix.bed.gz.tbi 524.1 KB ce3717c6bd96f5f2748c576ca87ff9f5
genomic_resource.yaml 1.4 KB 030c072f8541f58313a8db2de4fa5ee8
statistics/