Resource

Id DNase-seq/ENCSR679EFHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR679EFH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
Description
Labels
  • accession: ENCSR679EFH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • date_created: 2020-04-18T22:21:51.355638+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR679EFH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR679EFH float

DNase-seq_ENCSR679EFH
DNase-seq ENCSR679EFH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR679EFH [0.364, 49.7]
n
7,478,870
mean
6.12
sd
5.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74788700.23% 41721
chr1 755890 0.30% 4175
chr2 523039 0.22% 2939
chr3 426001 0.21% 2383
chr4 267354 0.14% 1475
chr5 344372 0.19% 1935
chr6 436339 0.26% 2433
chr7 339846 0.21% 1914
chr8 274012 0.19% 1556
chr9 306856 0.22% 1709
chr10 330245 0.25% 1880
chr11 377759 0.28% 2121
chr12 392804 0.29% 2177
chr13 156603 0.14% 869
chr14 256451 0.24% 1429
chr15 240501 0.24% 1372
chr16 303318 0.34% 1677
chr17 446025 0.54% 2443
chr18 117098 0.15% 671
chr19 489375 0.83% 2625
chr20 204791 0.32% 1174
chr21 85676 0.18% 491
chr22 177860 0.35% 987
chrX 226655 0.15% 1286
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41721 8 700 179.26 180
global segment-length histogram

Files

Filename Size md5
ENCFF516EQH.bed.gz 454.56 KB 945e1607fbbee4f3e018608c4737c6b2
ENCFF516EQH.tabix.bed.gz 409.36 KB 5e0143ebaa9a455ef37269ee5862f669
ENCFF516EQH.tabix.bed.gz.tbi 225.47 KB 44984f9d019a00d0e734b561e8996a1e
genomic_resource.yaml 2.22 KB 6c901c57032842a227d48c60c34a867e
statistics/