| Id: | DNase-seq/ENCSR679EFH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR679EFH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF301HWJ|/files/ENCFF301HWJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27526932 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR679EFH | float |
DNase-seq_ENCSR679EFH |
DNase-seq ENCSR679EFH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
|
 |
[0.364, 49.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF516EQH.bed.gz | 454.56 KB | 945e1607fbbee4f3e018608c4737c6b2 |
| ENCFF516EQH.bed.gz.dvc | 100.0 B | 5077bb95cd78e0beb3921ea79b0dc9ae |
| ENCFF516EQH.tabix.bed.gz | 409.36 KB | 5e0143ebaa9a455ef37269ee5862f669 |
| ENCFF516EQH.tabix.bed.gz.dvc | 106.0 B | c427366673f2784755c76b6faf2721a3 |
| ENCFF516EQH.tabix.bed.gz.tbi | 225.47 KB | 44984f9d019a00d0e734b561e8996a1e |
| ENCFF516EQH.tabix.bed.gz.tbi.dvc | 110.0 B | b494dd4c03479251f1cf4f799cc7271f |
| genomic_resource.yaml | 2.22 KB | 6c901c57032842a227d48c60c34a867e |
| genomic_resource_original.yaml | 2.04 KB | df1855cf08b830e82cecf3923bde907f |
| statistics/ |