DNase-seq_ENCSR678ILN
DNase-seq ENCSR678ILN [biosample_summary="Homo sapiens ELF-1"]
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| Id: | DNase-seq/ENCSR678ILN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR678ILN [biosample_summary="Homo sapiens ELF-1"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF432EWQ|/files/ENCFF432EWQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31475418 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF432EWQ|/files/ENCFF432EWQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR678ILN | float |
DNase-seq_ENCSR678ILN |
DNase-seq ENCSR678ILN [biosample_summary="Homo sapiens ELF-1"]
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[0.0314, 39.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF212CJT.bed.gz | 2.09 MB | 74c9f51793109bf080da601548d501e3 |
| ENCFF212CJT.bed.gz.dvc | 101.0 B | 5a67435c795b072f2979995780dc2b64 |
| ENCFF212CJT.tabix.bed.gz | 1.93 MB | 62120a493321f4b4e86730c34a524a49 |
| ENCFF212CJT.tabix.bed.gz.dvc | 107.0 B | 7d5d818aa53cbc7f7684818156aeca12 |
| ENCFF212CJT.tabix.bed.gz.tbi | 624.19 KB | edddc60c8a614f4890864b50e62c8d3d |
| ENCFF212CJT.tabix.bed.gz.tbi.dvc | 110.0 B | dfdcc0eca6796e26860479d373230fc5 |
| genomic_resource.yaml | 2.55 KB | e035f196b86dbe46c712b97ba4e34298 |
| genomic_resource_original.yaml | 2.48 KB | ddd50133bfc594c0b8b77a4cbe0c4f3a |
| statistics/ |