DNase-seq_ENCSR677XGD
DNase-seq ENCSR677XGD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (89 years)"]
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| Id: | DNase-seq/ENCSR677XGD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR677XGD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (89 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF914GOI|/files/ENCFF914GOI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR677XGD | float |
DNase-seq_ENCSR677XGD |
DNase-seq ENCSR677XGD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (89 years)"]
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[0.0684, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF051EMZ.bed.gz | 658.78 KB | 31b3b49b7d37c5b8e4ece7d24e7e4950 |
| ENCFF051EMZ.bed.gz.dvc | 100.0 B | cf1527b4430e91f4fce34f350357916b |
| ENCFF051EMZ.tabix.bed.gz | 597.51 KB | a5533d25331146b3e47da00556f100fb |
| ENCFF051EMZ.tabix.bed.gz.dvc | 106.0 B | 2515e9d2844aa9ce23f64d0c3d15ba37 |
| ENCFF051EMZ.tabix.bed.gz.tbi | 264.14 KB | f8423241d1ceb810f98dc4a4b502bc8f |
| ENCFF051EMZ.tabix.bed.gz.tbi.dvc | 110.0 B | a793be315a65e878a813abaad819c33d |
| genomic_resource.yaml | 2.23 KB | bebeeee93d1e8fa6ed0659cbfe21e459 |
| genomic_resource_original.yaml | 2.08 KB | f48c309a5e1d241e6d101a7ccb72d344 |
| statistics/ |