Resource

Id DNase-seq/ENCSR676GAWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR676GAW [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR676GAW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000672/
  • biosample_summary: Homo sapiens activated gamma-delta T cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:07.873810+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR676GAW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR676GAW float

DNase-seq_ENCSR676GAW
DNase-seq ENCSR676GAW [biosample_summary="Homo sapiens activated gamma-delta T cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR676GAW [0.0812, 55.7]
n
10,801,586
mean
4.54
sd
5.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 108015860.34% 57006
chr1 1090479 0.44% 5707
chr2 750860 0.31% 3957
chr3 567401 0.29% 2990
chr4 373489 0.20% 1971
chr5 481927 0.27% 2574
chr6 608291 0.36% 3189
chr7 493866 0.31% 2634
chr8 418514 0.29% 2245
chr9 424931 0.31% 2246
chr10 500862 0.37% 2643
chr11 565374 0.42% 2996
chr12 554717 0.42% 2926
chr13 211383 0.18% 1107
chr14 381898 0.36% 2018
chr15 360247 0.35% 1927
chr16 446045 0.49% 2332
chr17 661965 0.80% 3464
chr18 166874 0.21% 875
chr19 694951 1.19% 3585
chr20 319368 0.50% 1728
chr21 132081 0.28% 700
chr22 276244 0.54% 1483
chrX 319476 0.20% 1705
chrY 343 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57006 4 820 189.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF459BJA.bed.gz 642.97 KB 002a9d6251675e7f056ecc42448ec3ec
ENCFF459BJA.tabix.bed.gz 586.48 KB 74b0616ff7e82acd0b96d31afe1940ee
ENCFF459BJA.tabix.bed.gz.tbi 247.9 KB 1ac19e63c7a131b0ab152fe7e59fc2a9
genomic_resource.yaml 1.5 KB 308152f6e5a9b1defeea69c63523ff1b
statistics/