DNase-seq_ENCSR672MOG
DNase-seq ENCSR672MOG [biosample_summary="Homo sapiens sciatic nerve tissue female adult (41 years)"]
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| Id: | DNase-seq/ENCSR672MOG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR672MOG [biosample_summary="Homo sapiens sciatic nerve tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF107GZP|/files/ENCFF107GZP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR672MOG | float |
DNase-seq_ENCSR672MOG |
DNase-seq ENCSR672MOG [biosample_summary="Homo sapiens sciatic nerve tissue female adult (41 years)"]
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[0.0427, 22.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF552QBG.bed.gz | 1.36 MB | fd43ed9717049f717e88879f2d19c6a9 |
| ENCFF552QBG.bed.gz.dvc | 101.0 B | 3a6a599e8e536ba532b247234abd1fcd |
| ENCFF552QBG.tabix.bed.gz | 1.28 MB | b23ba1ba8f557a40405a25b64b20e25d |
| ENCFF552QBG.tabix.bed.gz.dvc | 107.0 B | ac2a85f4ebef74f4a0ecc9b67d672907 |
| ENCFF552QBG.tabix.bed.gz.tbi | 278.1 KB | 22d62e320416406bac4feee79b632ae2 |
| ENCFF552QBG.tabix.bed.gz.tbi.dvc | 110.0 B | ebe044ecb4eb439af406bb984fdc03d4 |
| genomic_resource.yaml | 2.05 KB | 3e702aed376b0fbdc794288e2d390804 |
| genomic_resource_original.yaml | 1.94 KB | 09f28bca9fb5c7c78684711b4a8ff0e9 |
| statistics/ |