Resource

Id DNase-seq/ENCSR672DWHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR672DWH [biosample_summary="Homo sapiens small intestine tissue male embryo (115 days)"]
Description
Labels
  • accession: ENCSR672DWH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male embryo (115 days)
  • date_created: 2015-09-16T21:42:48.277246+00:00
  • date_released: 2013-07-31
  • doi:
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (115 days)
  • status: released
  • submitter_comment: This experiment was originally revoked due to concerns of biosample mislabeling, but has been unrevoked on Sept 8, 2025 after a lab review determined the biosample was not mislabeled.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR672DWH float

DNase-seq_ENCSR672DWH
DNase-seq ENCSR672DWH [biosample_summary="Homo sapiens small intestine tissue male embryo (115 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR672DWH [3, 1.49e+03]
n
8,518,629
mean
93.7
sd
128

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85186290.26% 56702
chr1 827993 0.33% 5513
chr1_KI270709v1_random 150 0.22% 1
chr1_KI270711v1_random 150 0.36% 1
chr1_KI270713v1_random 600 1.47% 4
chr2 660809 0.27% 4398
chr3 509952 0.26% 3391
chr4 359842 0.19% 2395
chr4_GL000008v2_random 1597 0.76% 10
chr5 420300 0.23% 2798
chr6 525000 0.31% 3497
chr7 422992 0.27% 2813
chr8 342239 0.24% 2276
chr9 331626 0.24% 2207
chr10 400594 0.30% 2666
chr11 414750 0.31% 2759
chr12 438877 0.33% 2920
chr13 201144 0.18% 1341
chr14 295777 0.28% 1971
chr14_GL000194v1_random 300 0.16% 2
chr14_GL000225v1_random 1050 0.50% 7
chr15 271800 0.27% 1809
chr16 297564 0.33% 1982
chr16_KI270728v1_random 150 0.01% 1
chr17 432066 0.52% 2879
chr17_GL000205v2_random 600 0.32% 4
chr17_KI270729v1_random 450 0.16% 3
chr18 152026 0.19% 1010
chr19 415179 0.71% 2766
chr20 232650 0.36% 1548
chr21 99600 0.21% 664
chr22 175502 0.35% 1169
chr22_KI270733v1_random 600 0.33% 4
chr22_KI270736v1_random 150 0.08% 1
chr22_KI270738v1_random 300 0.30% 2
chrUn_GL000195v1 750 0.41% 5
chrUn_GL000216v2 750 0.42% 5
chrUn_GL000219v1 600 0.33% 4
chrUn_GL000220v1 450 0.28% 3
chrUn_GL000224v1 450 0.25% 3
chrUn_KI270336v1 150 14.62% 1
chrUn_KI270438v1 3000 2.67% 20
chrUn_KI270442v1 450 0.11% 3
chrUn_KI270466v1 150 12.17% 1
chrUn_KI270467v1 900 22.96% 6
chrUn_KI270519v1 150 0.11% 1
chrUn_KI270744v1 1800 1.07% 12
chrX 259650 0.17% 1726
chrY 15000 0.03% 100
3318 contigs with no values (123817123 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56702 6 450 150.24 150
global segment-length histogram

Files

Filename Size md5
ENCFF834QRV.bed.gz 556.22 KB 44bca51830e1f421fe704eb975821967
ENCFF834QRV.tabix.bed.gz 481.83 KB 6f2ced88b5e1a118548489b6a395eb37
ENCFF834QRV.tabix.bed.gz.tbi 288.5 KB 8a8b18a9741f3855cdb3a547bde93991
genomic_resource.yaml 1.4 KB dc12aedf83cb45c64d41b57f3b156aab
statistics/