DNase-seq_ENCSR671YPX
DNase-seq ENCSR671YPX [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (77 years)"]
×
| Id: | DNase-seq/ENCSR671YPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR671YPX [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (77 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF796UYJ|/files/ENCFF796UYJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR671YPX | float |
DNase-seq_ENCSR671YPX |
DNase-seq ENCSR671YPX [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (77 years)"]
|
|
[0.06, 11.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF980SGP.bed.gz | 687.61 KB | abde09ecd67108fd7c35e14f6480e456 |
| ENCFF980SGP.bed.gz.dvc | 100.0 B | 7efcbcdc1a5feff8fcce556f9341e95c |
| ENCFF980SGP.tabix.bed.gz | 628.82 KB | 443556a1c8290a832929abe2f83edd93 |
| ENCFF980SGP.tabix.bed.gz.dvc | 106.0 B | 0d51f827c423ecb22679a9427ba645af |
| ENCFF980SGP.tabix.bed.gz.tbi | 270.32 KB | 6184a1a96b3c2a4acbd3e9d72252686b |
| ENCFF980SGP.tabix.bed.gz.tbi.dvc | 110.0 B | 583cb8fb70c4fff2a55a5950403b20f5 |
| genomic_resource.yaml | 2.08 KB | dbedd36b35da47a0f6eb2b158fd54918 |
| genomic_resource_original.yaml | 1.97 KB | 46c2b8132f12f14c437415964c6be395 |
| statistics/ |