DNase-seq_ENCSR670VQZ
DNase-seq ENCSR670VQZ [biosample_summary="Homo sapiens fibroblast of upper back skin male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR670VQZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR670VQZ [biosample_summary="Homo sapiens fibroblast of upper back skin male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN570KAP|/analyses/ENCAN570KAP/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF268FTA|/files/ENCFF268FTA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31859799 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF228NEM|/files/ENCFF228NEM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31703827 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR670VQZ | float |
DNase-seq_ENCSR670VQZ |
DNase-seq ENCSR670VQZ [biosample_summary="Homo sapiens fibroblast of upper back skin male embryo (97 days)"]
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[2, 1.64e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF207HFD.bed.gz | 1.09 MB | dddea62edc4022db8b3a78d120ed2c26 |
| ENCFF207HFD.bed.gz.dvc | 101.0 B | 654752a7532f1e11a9e42deacc98b4d7 |
| ENCFF207HFD.tabix.bed.gz | 965.03 KB | 77449ed58bdcccb47485f14411a8fa21 |
| ENCFF207HFD.tabix.bed.gz.dvc | 106.0 B | 1402fa7f1c28203b058eef3042b62c0b |
| ENCFF207HFD.tabix.bed.gz.tbi | 524.69 KB | 2140b91ac3118884274281077a14e2b2 |
| ENCFF207HFD.tabix.bed.gz.tbi.dvc | 110.0 B | e9b85070ec81390aefbe3d2560405e35 |
| genomic_resource.yaml | 2.63 KB | 5e90070f13b8793a2260ccff7152725a |
| genomic_resource_original.yaml | 2.52 KB | 58c8935c8627f40c274661d913e0e4ed |
| statistics/ |