DNase-seq_ENCSR670MKJ
DNase-seq ENCSR670MKJ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (89 years)"]
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| Id: | DNase-seq/ENCSR670MKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR670MKJ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (89 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF366PMV|/files/ENCFF366PMV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR670MKJ | float |
DNase-seq_ENCSR670MKJ |
DNase-seq ENCSR670MKJ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (89 years)"]
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[0.0691, 13.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF887QIZ.bed.gz | 791.78 KB | a111c484d8167a8481eba25279847d5e |
| ENCFF887QIZ.bed.gz.dvc | 100.0 B | eb3cfc51ef1c2746848d2283b4ad7dba |
| ENCFF887QIZ.tabix.bed.gz | 744.34 KB | 8daf85cbf584118def38996986f255b3 |
| ENCFF887QIZ.tabix.bed.gz.dvc | 106.0 B | 1eca6cbe17dffefa4cae5309d9e012c6 |
| ENCFF887QIZ.tabix.bed.gz.tbi | 178.82 KB | 0eb68bebbe12ec56581adbcd93eba202 |
| ENCFF887QIZ.tabix.bed.gz.tbi.dvc | 110.0 B | b8aff2a6f287045d28b20cb33781d8bc |
| genomic_resource.yaml | 2.09 KB | 1bd787f67c3426b6f48c4fd05f11b088 |
| genomic_resource_original.yaml | 1.97 KB | 0cc4e26ddc3a448c2520e99aa6fe277f |
| statistics/ |