DNase-seq_ENCSR670BGI
DNase-seq ENCSR670BGI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR670BGI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR670BGI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF329ESC|/files/ENCFF329ESC/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR670BGI | float |
DNase-seq_ENCSR670BGI |
DNase-seq ENCSR670BGI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0837, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF443KKI.bed.gz | 632.07 KB | a2cee2b79b56856cf3afb614e84cf090 |
| ENCFF443KKI.bed.gz.dvc | 100.0 B | 519949bd0e074644ca92cf7f664014a6 |
| ENCFF443KKI.tabix.bed.gz | 579.05 KB | d944a15720e9f2a4d69efdf169b4428d |
| ENCFF443KKI.tabix.bed.gz.dvc | 106.0 B | 460ac5b1a9a42f9e97b4a57f7a597efd |
| ENCFF443KKI.tabix.bed.gz.tbi | 229.7 KB | 6e1c83e36a50890d46ddea8b3efae6e0 |
| ENCFF443KKI.tabix.bed.gz.tbi.dvc | 110.0 B | 486bda00085e1641df8c7b96075e4bba |
| genomic_resource.yaml | 2.14 KB | bdc70a0fa5a20c47bb9804aaa91ceaa1 |
| genomic_resource_original.yaml | 2.01 KB | bdca52d2979e3aec8b4a404296eaf892 |
| statistics/ |