| Id: | DNase-seq/ENCSR669NQZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR669NQZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF401YKR|/files/ENCFF401YKR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46263246 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR669NQZ | float |
DNase-seq_ENCSR669NQZ |
DNase-seq ENCSR669NQZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
|
 |
[0.173, 87.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF370QDV.bed.gz | 530.89 KB | 74bb5d0b76e2d880309f606ec66f853a |
| ENCFF370QDV.bed.gz.dvc | 100.0 B | 10eba63c93312d6647a035fe179be0f9 |
| ENCFF370QDV.tabix.bed.gz | 482.59 KB | 32816d4dda76cbb1379912c9877aed52 |
| ENCFF370QDV.tabix.bed.gz.dvc | 106.0 B | 153d281019f201c2b97ad30c9ea3b426 |
| ENCFF370QDV.tabix.bed.gz.tbi | 222.82 KB | 8179a819e66b0b6bb5d5363dc8d36fdb |
| ENCFF370QDV.tabix.bed.gz.tbi.dvc | 110.0 B | 90a8bacdcfd6f8855ef768e446e3c4c4 |
| genomic_resource.yaml | 2.46 KB | 1580466a5cd9c9b0154fe5212ff39338 |
| genomic_resource_original.yaml | 2.23 KB | ed1c5dc9190b9df5ad32583ab5f49342 |
| statistics/ |