Resource

Id DNase-seq/ENCSR669NQZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR669NQZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
Description
Labels
  • accession: ENCSR669NQZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours
  • date_created: 2020-04-19T18:36:49.943137+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR669NQZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR669NQZ float

DNase-seq_ENCSR669NQZ
DNase-seq ENCSR669NQZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR669NQZ [0.173, 87.1]
n
8,861,450
mean
8.27
sd
10.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88614500.28% 47649
chr1 898512 0.36% 4854
chr2 619363 0.26% 3345
chr3 472250 0.24% 2501
chr4 296584 0.16% 1567
chr5 383709 0.21% 2080
chr6 521086 0.31% 2795
chr7 402255 0.25% 2200
chr8 317426 0.22% 1712
chr9 359281 0.26% 1944
chr10 386503 0.29% 2104
chr11 449339 0.33% 2412
chr12 460186 0.35% 2482
chr13 173951 0.15% 930
chr14 308616 0.29% 1672
chr15 286292 0.28% 1568
chr16 374693 0.41% 1998
chr17 552037 0.66% 2938
chr18 139286 0.17% 758
chr19 609301 1.04% 3176
chr20 261346 0.41% 1432
chr21 98569 0.21% 543
chr22 226341 0.45% 1219
chrX 264524 0.17% 1419
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47649 1 720 185.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF370QDV.bed.gz 530.89 KB 74bb5d0b76e2d880309f606ec66f853a
ENCFF370QDV.tabix.bed.gz 482.59 KB 32816d4dda76cbb1379912c9877aed52
ENCFF370QDV.tabix.bed.gz.tbi 222.82 KB 8179a819e66b0b6bb5d5363dc8d36fdb
genomic_resource.yaml 2.46 KB 1580466a5cd9c9b0154fe5212ff39338
statistics/