DNase-seq_ENCSR664PKM
DNase-seq ENCSR664PKM [biosample_summary="Homo sapiens heart tissue embryo (59 days) and female embryo (76 days)"]
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| Id: | DNase-seq/ENCSR664PKM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR664PKM [biosample_summary="Homo sapiens heart tissue embryo (59 days) and female embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (59 days) female embryo (76 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF845UVD|/files/ENCFF845UVD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF618GPG|/files/ENCFF618GPG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR664PKM | float |
DNase-seq_ENCSR664PKM |
DNase-seq ENCSR664PKM [biosample_summary="Homo sapiens heart tissue embryo (59 days) and female embryo (76 days)"]
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[0.016, 13.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF372KCN.bed.gz | 2.14 MB | 27b655acdece28e6926d6327149b19fc |
| ENCFF372KCN.bed.gz.dvc | 101.0 B | 8137c24d702a42b6855563ec078a4766 |
| ENCFF372KCN.tabix.bed.gz | 2.01 MB | 7571777ef81e580998dd82aea2386f28 |
| ENCFF372KCN.tabix.bed.gz.dvc | 107.0 B | 9d6faea39ef5ca10cfa84917e3a3271d |
| ENCFF372KCN.tabix.bed.gz.tbi | 582.82 KB | 94ee8fc9e6991c02df44224efbfcb019 |
| ENCFF372KCN.tabix.bed.gz.tbi.dvc | 110.0 B | 824437ef5b08922d106d76db42f6974f |
| genomic_resource.yaml | 2.95 KB | 4412d73f69ac4e3c371f2a726b5b1e1d |
| genomic_resource_original.yaml | 2.83 KB | 93ddf4d6547eb5d31f076e3334718625 |
| statistics/ |