DNase-seq_ENCSR663MNQ
DNase-seq ENCSR663MNQ [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR663MNQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR663MNQ [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF108BWV|/files/ENCFF108BWV/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR663MNQ | float |
DNase-seq_ENCSR663MNQ |
DNase-seq ENCSR663MNQ [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0575, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803HTS.bed.gz | 861.78 KB | 00fb9550c54fe15b07b680785adc94cf |
| ENCFF803HTS.bed.gz.dvc | 100.0 B | 1f5ac89b6ff622fd68ad07161d694d21 |
| ENCFF803HTS.tabix.bed.gz | 784.74 KB | 5d135aa355c4434fcc28f0b445c6682a |
| ENCFF803HTS.tabix.bed.gz.dvc | 106.0 B | 6841517c6481c30d5c9a452f69f528c7 |
| ENCFF803HTS.tabix.bed.gz.tbi | 349.92 KB | 65935fe67a7c928bf5b7728c5573dbf9 |
| ENCFF803HTS.tabix.bed.gz.tbi.dvc | 110.0 B | 07cb6b8e70da830e2a905b42006679d9 |
| genomic_resource.yaml | 2.25 KB | 92987980c424bfda2023781257645309 |
| genomic_resource_original.yaml | 2.1 KB | fca840c7a5e8cd988a0e6aaec812d052 |
| statistics/ |