DNase-seq_ENCSR662HMO
DNase-seq ENCSR662HMO [biosample_summary="Homo sapiens NAMALWA"]
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| Id: | DNase-seq/ENCSR662HMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR662HMO [biosample_summary="Homo sapiens NAMALWA"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF461HFP|/files/ENCFF461HFP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF628MNE|/files/ENCFF628MNE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR662HMO | float |
DNase-seq_ENCSR662HMO |
DNase-seq ENCSR662HMO [biosample_summary="Homo sapiens NAMALWA"]
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[0.0231, 36.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718RMW.bed.gz | 1.47 MB | d153142cf2504d06ec1ba6121318d812 |
| ENCFF718RMW.bed.gz.dvc | 101.0 B | cb29746137b38df9a05adaf96fb717bd |
| ENCFF718RMW.tabix.bed.gz | 1.36 MB | bab7c1144fbe66e07fb9d6bbf6260c48 |
| ENCFF718RMW.tabix.bed.gz.dvc | 107.0 B | 456edbda26fbe640149da0691a96fe0b |
| ENCFF718RMW.tabix.bed.gz.tbi | 479.99 KB | a9d2d99eeee362f5a9bc1ae8610de46b |
| ENCFF718RMW.tabix.bed.gz.tbi.dvc | 110.0 B | 895059e93b824697c94b5c8aa9d52fa0 |
| genomic_resource.yaml | 2.77 KB | 048828a91bfaea9e27db173f5637449f |
| genomic_resource_original.yaml | 2.7 KB | 02982a28b91a16dc4a463547e90fdc07 |
| statistics/ |