DNase-seq_ENCSR661AMM
DNase-seq ENCSR661AMM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (83 years)"]
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| Id: | DNase-seq/ENCSR661AMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR661AMM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF195KCN|/files/ENCFF195KCN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR661AMM | float |
DNase-seq_ENCSR661AMM |
DNase-seq ENCSR661AMM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (83 years)"]
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[0.0445, 15.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF981IQP.bed.gz | 1.23 MB | 9257317ddfc26d160c7852de3982cd58 |
| ENCFF981IQP.bed.gz.dvc | 101.0 B | 27cdecacc432a33498ae23a88e08e65e |
| ENCFF981IQP.tabix.bed.gz | 1.15 MB | f6d99c77f0fd973e4acb135549c86daf |
| ENCFF981IQP.tabix.bed.gz.dvc | 107.0 B | 65ff1d760a052016131791464bf06ce8 |
| ENCFF981IQP.tabix.bed.gz.tbi | 236.3 KB | 8299f4c56945ef3c71d1ed4e02565cfa |
| ENCFF981IQP.tabix.bed.gz.tbi.dvc | 110.0 B | a6e50e6da43e9a1f02ce6070c29f0b05 |
| genomic_resource.yaml | 2.09 KB | 525147c1f346236d98d5e34031206b42 |
| genomic_resource_original.yaml | 1.97 KB | 820e14805a3fbfb5c5e09f06f8078cb4 |
| statistics/ |