| Id: | DNase-seq/ENCSR660FSU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR660FSU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF349RNU|/files/ENCFF349RNU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46397158 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR660FSU | float |
DNase-seq_ENCSR660FSU |
DNase-seq ENCSR660FSU [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
|
 |
[0.216, 62.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF341YNA.bed.gz | 478.79 KB | fb718e6dad2f62c27342a4cbdced4212 |
| ENCFF341YNA.bed.gz.dvc | 100.0 B | 29fa062c020b9de9af057f23657a5735 |
| ENCFF341YNA.tabix.bed.gz | 433.55 KB | f5d4e7ca5e109c096dea4e87d98a82dd |
| ENCFF341YNA.tabix.bed.gz.dvc | 106.0 B | 0ffddab742cc6dda51da2a45bfa6450f |
| ENCFF341YNA.tabix.bed.gz.tbi | 213.92 KB | b8e5471ea5c573b6a4945c5f34d1916f |
| ENCFF341YNA.tabix.bed.gz.tbi.dvc | 110.0 B | 76b1fc9c799b731be29691fe078f1bc4 |
| genomic_resource.yaml | 2.32 KB | 73d90a77711bc7a1873b73df601615e4 |
| genomic_resource_original.yaml | 2.14 KB | d61a95a2ca3185bb7f188b243304b073 |
| statistics/ |