| Id: | DNase-seq/ENCSR658NVL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR658NVL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF151MKY|/files/ENCFF151MKY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41652770 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR658NVL | float |
DNase-seq_ENCSR658NVL |
DNase-seq ENCSR658NVL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
|
 |
[0.216, 64.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF467DXA.bed.gz | 719.57 KB | 518430cbc130a40f42011f8c9deb431a |
| ENCFF467DXA.bed.gz.dvc | 100.0 B | 20a57c222823f2a036f8696530db747a |
| ENCFF467DXA.tabix.bed.gz | 650.24 KB | 07876fa346758a4cc194b194a8c36530 |
| ENCFF467DXA.tabix.bed.gz.dvc | 106.0 B | 195df6bfd274eff8a82e85cb980a889f |
| ENCFF467DXA.tabix.bed.gz.tbi | 297.51 KB | 489cc4d5794f357a2e7fe1007ad86f0e |
| ENCFF467DXA.tabix.bed.gz.tbi.dvc | 110.0 B | 77ab7eca8ed7f3d73db4f340d80889e2 |
| genomic_resource.yaml | 2.44 KB | 19137e35171b40061cd5dc875fc61006 |
| genomic_resource_original.yaml | 2.21 KB | 7cc3152ec10a38fa99e80a87733b6c36 |
| statistics/ |