Resource

Id DNase-seq/ENCSR658NVLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR658NVL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR658NVL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-19T18:36:58.909565+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR658NVL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR658NVL float

DNase-seq_ENCSR658NVL
DNase-seq ENCSR658NVL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR658NVL [0.216, 64.7]
n
11,593,508
mean
6.38
sd
7.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 115935080.36% 65412
chr1 1157995 0.47% 6529
chr2 835135 0.34% 4756
chr3 664131 0.33% 3740
chr4 435034 0.23% 2464
chr5 536006 0.30% 3038
chr6 682382 0.40% 3831
chr7 527438 0.33% 2981
chr8 452234 0.31% 2595
chr9 481783 0.35% 2705
chr10 531474 0.40% 3040
chr11 570412 0.42% 3218
chr12 593859 0.45% 3325
chr13 238513 0.21% 1354
chr14 396362 0.37% 2231
chr15 387460 0.38% 2237
chr16 472829 0.52% 2659
chr17 647735 0.78% 3605
chr18 192309 0.24% 1113
chr19 712407 1.22% 3847
chr20 335292 0.52% 1917
chr21 135809 0.29% 774
chr22 276105 0.54% 1566
chrX 317342 0.20% 1809
chrY 13462 0.02% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65412 2 740 177.24 175
global segment-length histogram

Files

Filename Size md5
ENCFF467DXA.bed.gz 719.57 KB 518430cbc130a40f42011f8c9deb431a
ENCFF467DXA.tabix.bed.gz 650.24 KB 07876fa346758a4cc194b194a8c36530
ENCFF467DXA.tabix.bed.gz.tbi 297.51 KB 489cc4d5794f357a2e7fe1007ad86f0e
genomic_resource.yaml 2.44 KB 19137e35171b40061cd5dc875fc61006
statistics/