DNase-seq_ENCSR658EHM
DNase-seq ENCSR658EHM [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
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| Id: | DNase-seq/ENCSR658EHM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR658EHM [biosample_summary="Homo sapiens mesothelial cell of epicardium"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF139MJE|/files/ENCFF139MJE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR658EHM | float |
DNase-seq_ENCSR658EHM |
DNase-seq ENCSR658EHM [biosample_summary="Homo sapiens mesothelial cell of epicardium"]
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[0.0558, 17.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF291PBQ.bed.gz | 900.27 KB | 6852f4239db2fa643ae0920085bc091b |
| ENCFF291PBQ.bed.gz.dvc | 100.0 B | 4bfde89bd74b8bd7a613c30a43037d67 |
| ENCFF291PBQ.tabix.bed.gz | 843.44 KB | a6013432ef699e463fdd66c135ac1e2b |
| ENCFF291PBQ.tabix.bed.gz.dvc | 106.0 B | 38ffe6ac89c13da486c2fc3b39ab7d70 |
| ENCFF291PBQ.tabix.bed.gz.tbi | 265.05 KB | 7d51c6f9dc4ce1a34487cd3b8f87f8c0 |
| ENCFF291PBQ.tabix.bed.gz.tbi.dvc | 110.0 B | cab2d75ccaefc0e3cf5df5165a1a35ae |
| genomic_resource.yaml | 2.01 KB | 298701da3be311e62b0d5cae068dbd78 |
| genomic_resource_original.yaml | 1.92 KB | a4c239ce978a744e128b4244999fdec6 |
| statistics/ |