DNase-seq_ENCSR656QYL
DNase-seq ENCSR656QYL [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (103 days)"]
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| Id: | DNase-seq/ENCSR656QYL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR656QYL [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (103 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (103 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF718QTM|/files/ENCFF718QTM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR656QYL | float |
DNase-seq_ENCSR656QYL |
DNase-seq ENCSR656QYL [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (103 days)"]
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[0.164, 21.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF352SPO.bed.gz | 884.56 KB | 39a6b3fc882f9fa0aac94ff8e8e7806d |
| ENCFF352SPO.bed.gz.dvc | 100.0 B | c569254f9972798555cb727178cafb02 |
| ENCFF352SPO.tabix.bed.gz | 793.17 KB | 300af7a49db6b51b9a428ebb2996dca4 |
| ENCFF352SPO.tabix.bed.gz.dvc | 106.0 B | 90a00c83d441adbff78ff74c5e7b7158 |
| ENCFF352SPO.tabix.bed.gz.tbi | 421.52 KB | b0ed5cf2dad483c557066b3523c14c69 |
| ENCFF352SPO.tabix.bed.gz.tbi.dvc | 110.0 B | a8efacf95937d33e1410d3c082601d02 |
| genomic_resource.yaml | 2.09 KB | c7ec6eb4975de26062c1ac78e64aa1bd |
| genomic_resource_original.yaml | 1.98 KB | 1a6d59b9cc92f92c6acd6fce91139e5a |
| statistics/ |