Resource

Id DNase-seq/ENCSR656KLTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR656KLT [biosample_summary="Homo sapiens placenta tissue female embryo"]
Description
Labels
  • accession: ENCSR656KLT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo
  • date_created: 2019-08-02T16:57:25.853247+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR656KLT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR656KLT float

DNase-seq_ENCSR656KLT

DNase-seq ENCSR656KLT [biosample_summary="Homo sapiens placenta tissue female embryo"]
HISTOGRAM FOR DNase-seq_ENCSR656KLT [0.0509, 71.5]
n
23,200,540
mean
3.26
sd
4.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 232005400.72% 129935
chr1 2237640 0.90% 12569
chr2 1677742 0.69% 9565
chr3 1333341 0.67% 7621
chr4 963903 0.51% 5549
chr5 1108061 0.61% 6313
chr6 1228954 0.72% 7055
chr7 1223768 0.77% 6844
chr8 1045364 0.72% 5855
chr9 1036066 0.75% 5831
chr10 1055976 0.79% 5980
chr11 1334227 0.99% 7300
chr12 1023884 0.77% 5838
chr13 465102 0.41% 2673
chr14 802146 0.75% 4365
chr15 719515 0.71% 4051
chr16 857647 0.95% 4721
chr17 1169566 1.40% 6304
chr18 424285 0.53% 2443
chr19 1234556 2.11% 6511
chr20 669580 1.04% 3770
chr21 335630 0.72% 1808
chr22 622786 1.23% 3311
chrX 629850 0.40% 3650
chrY 951 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129935 1 900 178.55 160
global segment-length histogram

Files

Filename Size md5
ENCFF230HXW.bed.gz 1.42 MB ea143224cbb1af56ca2af51077bfe817
ENCFF230HXW.tabix.bed.gz 1.29 MB 99dc7a5eeebe2de7ea250e218349081e
ENCFF230HXW.tabix.bed.gz.tbi 434.61 KB dada777cc477bced2f5e87540d707dfa
genomic_resource.yaml 1.17 KB ed1f03bd1245bd81b9065615f902ca6f
statistics/