Resource

Id DNase-seq/ENCSR654WXXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR654WXX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR654WXX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:49.680923+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR654WXX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR654WXX float

DNase-seq_ENCSR654WXX
DNase-seq ENCSR654WXX [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR654WXX [0.379, 91.2]
n
6,266,634
mean
10.1
sd
10.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 62666340.19% 34861
chr1 638398 0.26% 3542
chr2 435234 0.18% 2430
chr3 333041 0.17% 1862
chr4 197669 0.10% 1101
chr5 273435 0.15% 1528
chr6 353569 0.21% 1963
chr7 291526 0.18% 1622
chr8 227618 0.16% 1265
chr9 249699 0.18% 1398
chr10 264756 0.20% 1498
chr11 333958 0.25% 1848
chr12 315825 0.24% 1758
chr13 129141 0.11% 712
chr14 222301 0.21% 1255
chr15 202857 0.20% 1138
chr16 262183 0.29% 1438
chr17 399754 0.48% 2206
chr18 89072 0.11% 508
chr19 448377 0.76% 2427
chr20 173519 0.27% 980
chr21 76230 0.16% 428
chr22 158636 0.31% 894
chrX 189836 0.12% 1060
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34861 20 640 179.76 180
global segment-length histogram

Files

Filename Size md5
ENCFF314VZJ.bed.gz 383.51 KB 3ddf833827f1cfff05c8557605123f49
ENCFF314VZJ.tabix.bed.gz 347.69 KB 1ba09c08a05cd0424de79614c3fc9d90
ENCFF314VZJ.tabix.bed.gz.tbi 192.93 KB a5700d4e32d6daf23919206ad6cabf8f
genomic_resource.yaml 1.88 KB 4414f294b58e831a08d42a030e934df2
statistics/