Resource

Id DNase-seq/ENCSR654GSGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR654GSG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue male adult (90 or above years)"]
Description
Labels
  • accession: ENCSR654GSG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with Alzheimer's disease; posterior cingulate gyrus tissue male adult (90 or above years)
  • date_created: 2020-11-04T06:14:32.862868+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR654GSG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR654GSG float

DNase-seq_ENCSR654GSG
DNase-seq ENCSR654GSG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue male adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR654GSG [0.0734, 27.8]
n
13,422,345
mean
2.93
sd
3.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 134223450.42% 71744
chr1 1308917 0.53% 6919
chr2 967577 0.40% 5258
chr3 785628 0.40% 4197
chr4 536876 0.28% 2853
chr5 668010 0.37% 3632
chr6 728166 0.43% 3830
chr7 661929 0.42% 3551
chr8 576728 0.40% 3095
chr9 584791 0.42% 3133
chr10 614716 0.46% 3311
chr11 729838 0.54% 3926
chr12 669729 0.50% 3550
chr13 285875 0.25% 1532
chr14 423070 0.40% 2261
chr15 443116 0.43% 2365
chr16 521461 0.58% 2815
chr17 698915 0.84% 3720
chr18 260939 0.32% 1415
chr19 728546 1.24% 3735
chr20 385126 0.60% 2130
chr21 144076 0.31% 780
chr22 319419 0.63% 1718
chrX 364628 0.23% 1942
chrY 14269 0.02% 76
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71744 1 820 187.09 180
global segment-length histogram

Files

Filename Size md5
ENCFF110FLB.bed.gz 793.58 KB 50decded0d1e33a1ad874279e15377a2
ENCFF110FLB.tabix.bed.gz 722.86 KB bf93721ee061326ec6cc9ccbc40cd52c
ENCFF110FLB.tabix.bed.gz.tbi 324.98 KB 632a100f2d67557ac281a0c074adedeb
genomic_resource.yaml 1.44 KB 9e04c753b8ab8a9f2d3e863220d45289
statistics/