Resource

Id DNase-seq/ENCSR653OVFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR653OVF [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR653OVF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • date_created: 2020-04-18T05:26:51.374452+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR653OVF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR653OVF float

DNase-seq_ENCSR653OVF
DNase-seq ENCSR653OVF [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR653OVF [0.68, 106]
n
5,526,865
mean
13.3
sd
12.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55268650.17% 30960
chr1 569645 0.23% 3176
chr2 386234 0.16% 2168
chr3 286110 0.14% 1614
chr4 179157 0.09% 995
chr5 243672 0.13% 1363
chr6 302741 0.18% 1713
chr7 254221 0.16% 1441
chr8 189767 0.13% 1089
chr9 223257 0.16% 1269
chr10 227967 0.17% 1301
chr11 296348 0.22% 1652
chr12 282622 0.21% 1562
chr13 107382 0.09% 607
chr14 190688 0.18% 1071
chr15 181257 0.18% 1036
chr16 237477 0.26% 1323
chr17 345225 0.41% 1935
chr18 84585 0.11% 468
chr19 416499 0.71% 2248
chr20 156056 0.24% 889
chr21 62289 0.13% 353
chr22 139732 0.27% 773
chrX 163934 0.11% 914
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30960 15 660 178.52 180
global segment-length histogram

Files

Filename Size md5
ENCFF991TUA.bed.gz 341.37 KB a6d19a8a72e9ce80014731d621b32354
ENCFF991TUA.tabix.bed.gz 305.88 KB 11461bffb60ab48c6bc67eb4979cc426
ENCFF991TUA.tabix.bed.gz.tbi 175.62 KB be98613cb4fa146fc463e49540a1417a
genomic_resource.yaml 2.31 KB d46ebd5a2c73e80d4b36b25dfdc98ab6
statistics/