| Id: | DNase-seq/ENCSR653OVF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR653OVF [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour output_type: peaks audit_error: Alignment file {ENCFF318YBS|/files/ENCFF318YBS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 13243896 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR653OVF | float |
DNase-seq_ENCSR653OVF |
DNase-seq ENCSR653OVF [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
|
 |
[0.68, 106] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991TUA.bed.gz | 341.37 KB | a6d19a8a72e9ce80014731d621b32354 |
| ENCFF991TUA.bed.gz.dvc | 100.0 B | 0ab8c64545f0ced96cef1bfccba17af7 |
| ENCFF991TUA.tabix.bed.gz | 305.88 KB | 11461bffb60ab48c6bc67eb4979cc426 |
| ENCFF991TUA.tabix.bed.gz.dvc | 106.0 B | fe5e4e1dfec42a17b29d908f510f6714 |
| ENCFF991TUA.tabix.bed.gz.tbi | 175.62 KB | be98613cb4fa146fc463e49540a1417a |
| ENCFF991TUA.tabix.bed.gz.tbi.dvc | 110.0 B | 0f7ac31d0b255f0c4ed9eddd2b04f957 |
| genomic_resource.yaml | 2.31 KB | d46ebd5a2c73e80d4b36b25dfdc98ab6 |
| genomic_resource_original.yaml | 2.13 KB | 3fd7923b79701fc03e4e2589da9cbf31 |
| statistics/ |