Resource

Id DNase-seq/ENCSR653ISVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR653ISV [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
Description
Labels
  • accession: ENCSR653ISV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • date_created: 2020-03-30T21:22:40.375340+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR653ISV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR653ISV float

DNase-seq_ENCSR653ISV
DNase-seq ENCSR653ISV [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR653ISV [0.0374, 17.5]
n
33,179,283
mean
1.1
sd
1.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 331792831.03% 140689
chr1 3102409 1.25% 12834
chr2 2938837 1.21% 12618
chr3 1761152 0.89% 7481
chr4 877694 0.46% 3698
chr5 1494623 0.82% 6370
chr6 1740909 1.02% 7351
chr7 1665099 1.04% 7103
chr8 1251716 0.86% 5388
chr9 1442460 1.04% 6163
chr10 1891393 1.41% 8133
chr11 1679117 1.24% 7037
chr12 1454829 1.09% 6038
chr13 655188 0.57% 2823
chr14 1171073 1.09% 4979
chr15 1397010 1.37% 6136
chr16 1210788 1.34% 5117
chr17 1934098 2.32% 8007
chr18 696353 0.87% 3048
chr19 1418714 2.42% 5781
chr20 1035833 1.61% 4533
chr21 600126 1.28% 2574
chr22 948789 1.87% 3999
chrX 810773 0.52% 3476
chrY 300 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140689 1 1360 235.83 213
global segment-length histogram

Files

Filename Size md5
ENCFF143TBS.bed.gz 1.37 MB 7e643976f3dc101b658dd9c9fe1e5daf
ENCFF143TBS.tabix.bed.gz 1.3 MB f7536773adfa740da1d6f297276e2be8
ENCFF143TBS.tabix.bed.gz.tbi 270.67 KB e90c1d32b6c376392b4f2abdb94332c1
genomic_resource.yaml 1.64 KB f530044aa7d1a1ffa3f438b11ebf7ffc
statistics/