Resource

Id DNase-seq/ENCSR652IZWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR652IZW [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR652IZW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)
  • date_created: 2020-11-04T06:14:32.465531+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR652IZW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR652IZW float

DNase-seq_ENCSR652IZW

DNase-seq ENCSR652IZW [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
HISTOGRAM FOR DNase-seq_ENCSR652IZW [0.109, 74.6]
n
11,715,762
mean
2.61
sd
2.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117157620.36% 63155
chr1 1074337 0.43% 5886
chr2 829376 0.34% 4503
chr3 591573 0.30% 3191
chr4 510344 0.27% 2656
chr5 516637 0.28% 2812
chr6 469580 0.27% 2582
chr7 600569 0.38% 3234
chr8 619281 0.43% 3326
chr9 561002 0.41% 3019
chr10 551874 0.41% 3008
chr11 741752 0.55% 3994
chr12 500407 0.38% 2727
chr13 232982 0.20% 1237
chr14 430852 0.40% 2302
chr15 344222 0.34% 1856
chr16 449732 0.50% 2444
chr17 601982 0.72% 3305
chr18 174570 0.22% 957
chr19 617306 1.05% 3198
chr20 378367 0.59% 2069
chr21 262044 0.56% 1345
chr22 405020 0.80% 2198
chrX 251268 0.16% 1299
chrY 685 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63155 1 820 185.51 180
global segment-length histogram

Files

Filename Size md5
ENCFF008WSU.bed.gz 684.09 KB fe7319cbaa80657b4f4e43082895f987
ENCFF008WSU.tabix.bed.gz 622.05 KB 05591c430d5c820ed52ea659af0534bf
ENCFF008WSU.tabix.bed.gz.tbi 244.38 KB c46479bd70c16d25f9fe4233a1f48028
genomic_resource.yaml 1.31 KB c6898e7f22d4f2baa466760595bcfaf3
statistics/