DNase-seq_ENCSR650TZF
DNase-seq ENCSR650TZF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR650TZF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR650TZF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF072OFG|/files/ENCFF072OFG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR650TZF | float |
DNase-seq_ENCSR650TZF |
DNase-seq ENCSR650TZF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.11, 16.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF653GPF.bed.gz | 629.25 KB | 6f01aab52324f09c35b27021ce7c76e1 |
| ENCFF653GPF.bed.gz.dvc | 100.0 B | 6b0416e16786385c51213dda9f464934 |
| ENCFF653GPF.tabix.bed.gz | 569.28 KB | 2540d2f65f9dd23889d456552cc67f66 |
| ENCFF653GPF.tabix.bed.gz.dvc | 106.0 B | 367c9d330a7e78df5afc48c51dbcc278 |
| ENCFF653GPF.tabix.bed.gz.tbi | 281.88 KB | 68caa5cabfd19925e53a99b632f051f0 |
| ENCFF653GPF.tabix.bed.gz.tbi.dvc | 110.0 B | e6dae1848575cdb527affa073db79082 |
| genomic_resource.yaml | 2.26 KB | 5b5b0eff96c0b63d36d850a1101d31dc |
| genomic_resource_original.yaml | 2.11 KB | 00b216e709b5e9550ac7df3468ed114b |
| statistics/ |