DNase-seq_ENCSR650FLQ
DNase-seq ENCSR650FLQ [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR650FLQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR650FLQ [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN628FDM|/analyses/ENCAN628FDM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF729TER|/files/ENCFF729TER/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR650FLQ | float |
DNase-seq_ENCSR650FLQ |
DNase-seq ENCSR650FLQ [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)"]
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[8, 8.75e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF984SJC.bed.gz | 671.72 KB | 83723ff470da429ff71efad2ea5092c6 |
| ENCFF984SJC.bed.gz.dvc | 100.0 B | c98fb4830bb6f683adbacfd17ecaed55 |
| ENCFF984SJC.tabix.bed.gz | 572.56 KB | 4d2b024fa089d589168470c81aa511b7 |
| ENCFF984SJC.tabix.bed.gz.dvc | 106.0 B | ac5acff1d798297f597ed76bf4352a2f |
| ENCFF984SJC.tabix.bed.gz.tbi | 323.16 KB | 6a72d85e56289dbcdeec6e9bc03eb2f9 |
| ENCFF984SJC.tabix.bed.gz.tbi.dvc | 110.0 B | 85d41758a08138007fc338743eb7f3f9 |
| genomic_resource.yaml | 2.23 KB | 0dbb35881e5bc9e5a879a6ddd4cabaeb |
| genomic_resource_original.yaml | 2.12 KB | bff0642df6407cd8ef4d12a7de50d26f |
| statistics/ |