DNase-seq_ENCSR649XRC
DNase-seq ENCSR649XRC [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
×
| Id: | DNase-seq/ENCSR649XRC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR649XRC [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: peaks audit_warning: Alignment file {ENCFF282TVE|/files/ENCFF282TVE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24166612 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF282TVE|/files/ENCFF282TVE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR649XRC | float |
DNase-seq_ENCSR649XRC |
DNase-seq ENCSR649XRC [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell female adult (33 years)"]
|
|
[0.457, 33.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF392UZA.bed.gz | 346.85 KB | ae83beda4857a6e45e26b8bb3e4db71a |
| ENCFF392UZA.bed.gz.dvc | 100.0 B | 05be5abca67eb270a4ede8385d3dc212 |
| ENCFF392UZA.tabix.bed.gz | 311.16 KB | c1bbe18148d8495f1177e8b7d561dce0 |
| ENCFF392UZA.tabix.bed.gz.dvc | 106.0 B | a94763a08715caf3a70102ab5ca9407f |
| ENCFF392UZA.tabix.bed.gz.tbi | 185.94 KB | a818b3c51fba687d9f420d0fc7185a73 |
| ENCFF392UZA.tabix.bed.gz.tbi.dvc | 110.0 B | 53de59fa5d62063dcb74297d54e1fe42 |
| genomic_resource.yaml | 2.71 KB | b6169da3dec34d296ff2a0432bd1d67a |
| genomic_resource_original.yaml | 2.59 KB | d89261152a1a33c84aa2234c4d3120a2 |
| statistics/ |