DNase-seq_ENCSR649MJI
DNase-seq ENCSR649MJI [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR649MJI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR649MJI [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF138DUZ|/files/ENCFF138DUZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR649MJI | float |
DNase-seq_ENCSR649MJI |
DNase-seq ENCSR649MJI [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.138, 18.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF707POR.bed.gz | 336.8 KB | 59cbd03818e849b88877777274de994a |
| ENCFF707POR.bed.gz.dvc | 100.0 B | b5920861d0791860f0a625693149edbe |
| ENCFF707POR.tabix.bed.gz | 304.93 KB | b33542a7d2c7ee142e05c5883226d1ad |
| ENCFF707POR.tabix.bed.gz.dvc | 106.0 B | c8e67876f89a67ff369de9ba0739ba6f |
| ENCFF707POR.tabix.bed.gz.tbi | 176.51 KB | 9875bdf76f0709de0c2472db7be8b6a9 |
| ENCFF707POR.tabix.bed.gz.tbi.dvc | 110.0 B | 0b56806f63e7e4b19f64722b60d613c9 |
| genomic_resource.yaml | 2.29 KB | fa18e78b6e783711b5f30fcc09130b2a |
| genomic_resource_original.yaml | 2.13 KB | c364ff392a0a12ad7b5a747c747f9e0c |
| statistics/ |