Resource

Id DNase-seq/ENCSR649KBBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR649KBB [biosample_summary="Homo sapiens brain tissue male embryo (122 days)"]
Description
Labels
  • accession: ENCSR649KBB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue male embryo (122 days)
  • date_created: 2015-09-16T21:42:28.014384+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR649KBB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (122 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR649KBB float

DNase-seq_ENCSR649KBB
DNase-seq ENCSR649KBB [biosample_summary="Homo sapiens brain tissue male embryo (122 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR649KBB [0.0263, 67]
n
49,882,291
mean
1.83
sd
3.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 498822911.55% 265050
chr1 4132995 1.66% 21912
chr2 4341388 1.79% 23073
chr3 3524426 1.78% 18671
chr4 2879585 1.51% 15353
chr5 3134232 1.73% 16625
chr6 3045282 1.78% 16149
chr7 2673122 1.68% 14230
chr8 2602063 1.79% 13762
chr9 2054157 1.48% 10918
chr10 2354362 1.76% 12596
chr11 2451295 1.81% 12943
chr12 2363284 1.77% 12558
chr13 1616763 1.41% 8609
chr14 1602964 1.50% 8498
chr15 1479802 1.45% 7823
chr16 1448734 1.60% 7714
chr17 1610947 1.93% 8612
chr18 1332800 1.66% 7048
chr19 1000410 1.71% 5256
chr20 1198404 1.86% 6375
chr21 571335 1.22% 3019
chr22 723208 1.42% 3863
chrX 1658673 1.06% 8984
chrY 82060 0.14% 459
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 265050 1 880 188.2 180
global segment-length histogram

Files

Filename Size md5
ENCFF675XNL.bed.gz 2.83 MB f05e0e58d3e9dd6c2a82f45eb5961760
ENCFF675XNL.tabix.bed.gz 2.58 MB 5182c562b9d03c881e790f2b90db8cd1
ENCFF675XNL.tabix.bed.gz.tbi 798.77 KB 8eb2e39f5e81ee36f1e982beb50bcd64
genomic_resource.yaml 1.2 KB 55e0648c44f457c577ca4bde8cfacefa
statistics/