Resource

Id DNase-seq/ENCSR648GDPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR648GDP [biosample_summary="Homo sapiens fibroblast of skin of left biceps male embryo (97 days)"]
Description
Labels
  • accession: ENCSR648GDP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000521/
  • biosample_summary: Homo sapiens fibroblast of skin of left biceps male embryo (97 days)
  • date_created: 2015-09-16T21:42:12.608518+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR648GDP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR648GDP float

DNase-seq_ENCSR648GDP
DNase-seq ENCSR648GDP [biosample_summary="Homo sapiens fibroblast of skin of left biceps male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR648GDP [0.204, 51.4]
n
15,340,056
mean
4.16
sd
4.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153400560.48% 82749
chr1 1402959 0.56% 7609
chr2 1276307 0.53% 6939
chr3 1067138 0.54% 5744
chr4 828243 0.44% 4514
chr5 938646 0.52% 5037
chr6 991249 0.58% 5308
chr7 753492 0.47% 4094
chr8 730691 0.50% 3950
chr9 666292 0.48% 3596
chr10 744093 0.56% 4004
chr11 762586 0.56% 4115
chr12 773893 0.58% 4155
chr13 434566 0.38% 2330
chr14 466108 0.44% 2492
chr15 502661 0.49% 2716
chr16 442431 0.49% 2400
chr17 571033 0.69% 3085
chr18 363957 0.45% 1981
chr19 441755 0.75% 2284
chr20 364937 0.57% 1975
chr21 201334 0.43% 1060
chr22 221164 0.44% 1221
chrX 378379 0.24% 2055
chrY 16142 0.03% 85
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82749 11 860 185.38 180
global segment-length histogram

Files

Filename Size md5
ENCFF251OYZ.bed.gz 893.38 KB b39d78fd81ffd1b9fe88a77d3fb89715
ENCFF251OYZ.tabix.bed.gz 795.52 KB 4ee9d404934f08ba18d4f2154157f163
ENCFF251OYZ.tabix.bed.gz.tbi 424.93 KB 3b84e4a918f2f6f7f1215759e513b0d2
genomic_resource.yaml 1.88 KB dc015ca7efa152dd0f36692f73b17bc7
statistics/