DNase-seq_ENCSR646JBR
DNase-seq ENCSR646JBR [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR646JBR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR646JBR [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF989COB|/files/ENCFF989COB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR646JBR | float |
DNase-seq_ENCSR646JBR |
DNase-seq ENCSR646JBR [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0895, 21] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF438WFB.bed.gz | 505.67 KB | 079055bdf280a80aa538867dde129020 |
| ENCFF438WFB.bed.gz.dvc | 100.0 B | f214be660e22cd12872402c54f0d4cf8 |
| ENCFF438WFB.tabix.bed.gz | 456.88 KB | e07017eb5279e1865bb623afe5ac5e64 |
| ENCFF438WFB.tabix.bed.gz.dvc | 106.0 B | d8586ca9fc318ecfdb0a57cdef59877b |
| ENCFF438WFB.tabix.bed.gz.tbi | 236.64 KB | ca8198b6bffe4143896f86420d6adacc |
| ENCFF438WFB.tabix.bed.gz.tbi.dvc | 110.0 B | e4417944efde8736846d1ee9e6e59d62 |
| genomic_resource.yaml | 2.26 KB | a16af30ed6afefb9e0e8d28e158f84d2 |
| genomic_resource_original.yaml | 2.11 KB | cca0e0673c94d5b22b73b8a073261209 |
| statistics/ |